Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs12476489 chr2:54793572 C/G 5.63E-5 133 46.3 42.12 22.42 KM Plot
TGCT rs12513579 chr5:1779874 A/G 3.39E-12 134 18.85 41.97 42.27 KM Plot
TGCT rs12513620 chr5:1780074 G/A 4.1E-12 133 42.27 43.9 18.85 KM Plot
TGCT rs12514332 chr5:165677544 A/G 7.84E-7 134 42.03 82.6 0.57 KM Plot
TGCT rs12529803 chr6:42595047 A/C 2.46E-8 134 37.95 49.93 20.6 KM Plot
TGCT rs12531054 chr7:128644251 A/C 1.69E-5 134 17.1 30.3 42.27 KM Plot
TGCT rs12531711 chr7:128617466 A/G 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs12534421 chr7:128624073 C/A 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs12535158 chr7:128625019 C/T 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs12536672 chr7:128717523 C/A 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs12536719 chr7:128717740 C/T 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs12537284 chr7:128717906 G/A 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs12539476 chr7:128657483 T/C 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs12541724 chr8:116895122 A/G 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs12545488 chr8:96452143 A/C 1.64E-5 134 45.1 35.37 19.23 KM Plot